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Selection of suitable reference genes for quantitative real-time PCR gene expression analysis in Salix matsudana under different abiotic stresses.

Identifieur interne : 000906 ( Main/Exploration ); précédent : 000905; suivant : 000907

Selection of suitable reference genes for quantitative real-time PCR gene expression analysis in Salix matsudana under different abiotic stresses.

Auteurs : Yunxing Zhang [République populaire de Chine] ; Xiaojiao Han [République populaire de Chine] ; Shuangshuang Chen [République populaire de Chine] ; Liu Zheng [République populaire de Chine] ; Xuelian He [République populaire de Chine] ; Mingying Liu [République populaire de Chine] ; Guirong Qiao [République populaire de Chine] ; Yang Wang [République populaire de Chine] ; Renying Zhuo [République populaire de Chine]

Source :

RBID : pubmed:28120870

Descripteurs français

English descriptors

Abstract

Salix matsudana is a deciduous, rapidly growing willow species commonly cultivated in China, which can tolerate drought, salt, and heavy metal stress conditions. Selection of suitable reference genes for quantitative real-time PCR is important for normalizing the expression of the key genes associated with various stresses. To validate suitable reference genes, we selected 11 candidate reference genes (five traditional housekeeping genes and six novel genes) and analyzed their expression stability in various samples, including different tissues and under different abiotic stress treatments. The expression of these genes was determined using five programs-geNorm, NormFinder, BestKeeper, ΔCt, and RefFinder. The results showed that α-TUB2 (alpha-tubulin 2) and DnaJ (chaperone protein DnaJ 49) were the most stable reference genes across all the tested samples. We measured the expression profiles of the defense response gene SmCAT (catalase) using the two most stable and one least stable reference genes in all samples of S. matsudana. The relative quantification of SmCAT varied greatly according to the different reference genes. We propose that α-TUB2 and DnaJ should be the preferred reference genes for normalization and quantification of transcript levels in future gene expression studies in willow species under various abiotic stress conditions.

DOI: 10.1038/srep40290
PubMed: 28120870
PubMed Central: PMC5264508


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Le document en format XML

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<title level="j">Scientific reports</title>
<idno type="eISSN">2045-2322</idno>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Algorithms (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Plant (MeSH)</term>
<term>Real-Time Polymerase Chain Reaction (methods)</term>
<term>Reference Standards (MeSH)</term>
<term>Reproducibility of Results (MeSH)</term>
<term>Salix (genetics)</term>
<term>Stress, Physiological (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Algorithmes (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Normes de référence (MeSH)</term>
<term>Reproductibilité des résultats (MeSH)</term>
<term>Réaction de polymérisation en chaine en temps réel (méthodes)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Salix (génétique)</term>
<term>Stress physiologique (génétique)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Salix</term>
<term>Stress, Physiological</term>
</keywords>
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<term>Salix</term>
<term>Stress physiologique</term>
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<div type="abstract" xml:lang="en">Salix matsudana is a deciduous, rapidly growing willow species commonly cultivated in China, which can tolerate drought, salt, and heavy metal stress conditions. Selection of suitable reference genes for quantitative real-time PCR is important for normalizing the expression of the key genes associated with various stresses. To validate suitable reference genes, we selected 11 candidate reference genes (five traditional housekeeping genes and six novel genes) and analyzed their expression stability in various samples, including different tissues and under different abiotic stress treatments. The expression of these genes was determined using five programs-geNorm, NormFinder, BestKeeper, ΔCt, and RefFinder. The results showed that α-TUB2 (alpha-tubulin 2) and DnaJ (chaperone protein DnaJ 49) were the most stable reference genes across all the tested samples. We measured the expression profiles of the defense response gene SmCAT (catalase) using the two most stable and one least stable reference genes in all samples of S. matsudana. The relative quantification of SmCAT varied greatly according to the different reference genes. We propose that α-TUB2 and DnaJ should be the preferred reference genes for normalization and quantification of transcript levels in future gene expression studies in willow species under various abiotic stress conditions.</div>
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